Recent Scientific Publications

As of February 26, 2024

Bao, Y., Marin, Z., Zhang, C., Neugebauer, K., Baddeley, D.,听Shribak, M., & Bewersdorf, J. (2024). A correlative quantitative phase contrast and fluorescence super-resolution microscope for imaging molecules in their cellular context.听Biophysical Journal,听123(3), 290a.

MacCord, K.听(2024, February). Sex Cells.听Natural History,听132(2), 30鈥35.

Nakamura, M., Kyoda, T.,听Yoshida, H., Takebayashi-Suzuki, K., Koike, R., Takahashi, E., Moriyama, Y.,听Wlizla, M.,听Horb, M. E., & Suzuki, A. (2024). Injury-induced cooperation of Inhibin尾A and JunB is essential for cell proliferation in听Xenopus听tadpole tail regeneration.听Scientific Reports,听14, 3679.

Perillo, M., Sepe, R. M., Paganos, P., Toscano, A., & Annunziata, R. (2024). Sea cucumbers: An emerging system in evo-devo.听EvoDevo,听15(1), 3.

Dor茅, H., Eisenberg, A., Junkins, E., Leventhal, G.,听Ganesh, A., Cordero, O.,听Paul, B., Valentine, D., O鈥橫alley, M., & Wilbanks, E. (2024). Targeted hypermutation of putative antigen sensors in multicellular bacteria.听Proceedings of the National Academy of Sciences of the United States of America,听121(9), e2316469121.

Kwiatkowski, E. R.,听Rosenthal, J. J. C., & Emery, P. (2024). Clocks at sea: The genome-editing tide is rising.听Trends in Genetics.

Yin, C.,听Morita, T., &听Parrish, J. Z.听(2024). A cell atlas of the larval Aedes aegypti ventral nerve cord.听Neural Development,听19(1), 2.*Authors from Neurobiology course*

Gordeev, V., Pokrovsky, O., Zhulidov, A., Filippov, A., Gurtovaya, T., Holmes, R., Kosmenko, L.,听McClelland, J.,听Peterson, B., & Tank, S. (2024). Dissolved Major and Trace Elements in the Largest Eurasian Arctic Rivers: Ob, Yenisey, Lena, and Kolyma.听Water,听16(2), 316.

Mensinger, A.听(2024). So many toadfish, so little time.听Journal of the Acoustical Society of America,听155(2), 817鈥825.

Costello, J. H.,听Colin, S. P., Gemmell, B. J., Dabiri, J. O., & Kanso, E. A. (2024). Turning kinematics of the scyphomedusa听Aurelia aurita.听Bioinspiration & Biomimetics,听19(2), 026005.

Vineis, J. H.,听Reznikoff, W. S., Antonopoulos, D. A., Koval, J., Chang, E.,听Fallon, B. R.,听Paul, B. G.,听Morrison, H. G., &听Sogin, M. L.听(2024). A novel conjugative transposon carrying an autonomously amplified plasmid.听mBio, e02787-23.

Valiela, I.,听Lloret, J.,听Chenoweth, K., & Wang, Y. (2024). An example of accelerated changes in current and future ecosystem trajectories: Unexpected rapid transitions in salt marsh vegetation forced by sea level rise.听Environmental Challenges, 100842.

You, Y., Tian, H., Pan, S., Shi, H., Lu, C., Batchelor, W., Cheng, B., Hui, D.,听Kicklighter, D., Liang, X., Li, X.,听Melillo, J., Pan, N., Prior, S., & Reilly, J. (2024). Net greenhouse gas balance in U.S. croplands: How can soils be part of the climate solution?听Global Change Biology,听30(1), e17109.

Mullowney, M. W., Fiebig, A., Schnizlein, M. K., McMillin, M., Rose, A. R., Koval, J., Rubin, D., Dalal, S.,听Sogin, M. L., Chang, E. B., Sidebottom, A. M., & Crosson, S. (2024). Microbially catalyzed conjugation of GABA and tyramine to bile acids.听Journal of Bacteriology, e00426-23.

Bulseco, A. N., Murphy, A. E.,听Giblin, A. E.,听Tucker, J., Sanderman, J., & Bowen, J. L. (2023). Marsh sediments chronically exposed to nitrogen enrichment contain degraded organic matter that is less vulnerable to decomposition via nitrate reduction.听Science of The Total Environment, 169681.

Hoffmann, C., &听Milovanovic, D.听(2023). Dipping contacts 鈥 a novel type of contact site at the interface between membraneless organelles and membranes.听Journal of Cell Science,听136(24), jcs261413.

Maienschein, J.听(2023). Everett Mendelsohn at the MBL.听Journal of the History of Biology.

Mark Welch, D., Gould, T., Olins, A., & Olins, D. (2023). The transcriptome of acute dehydration in myeloid leukemic cells.听Postepy Biochemii.

Trouche, B., Schauberger, C., Bouderka, F., Auguet, J.-C., Belser, C., Poulain, J., Thamdrup, B., Wincker, P., Arnaud-Haond, S., Glud, R. N., &听Maignien, L.听(2023). Distribution and genomic variation of ammonia-oxidizing archaea in abyssal and hadal surface sediments.听ISME Communications,听3(1), Article 1.

Richardson, J., Desai, A., Thom, J., Lindgren, K., Laudon, H., Peichl, M., Nilsson, M., Campeau, A., J盲rveoja, J., Hawman, P., Mishra, D., Smith, D., D鈥橝cunha, B., Knox, S., Ng, D., Johnson, M., Blackstock, J., Malone, S., Oberbauer, S., Detto, M., Wickland, K. P.,听Forbrich, I., Weston, N., Hung, J. K. Y., Edgar, C., Euskirchen, E. S., Bret-Harte, S., Dobkowski, J., Kling, G., Kane, E. S., Badiou, P., Bogard, M., Bohrer, G., O鈥橦alloran, T., Ritson, J., Arias-Ortiz, A., Baldocchi, D., Oikawa, P., Shahan, J., & Matsumura, M. (2024). On the Relationship Between Aquatic CO2听Concentration and Ecosystem Fluxes in Some of the World鈥檚 Key Wetland Types.听Wetlands,听44, 1.

Arkhipova, I., &听Yushenova, I.听(2023). To Be Mobile or Not: The Variety of Reverse Transcriptases and Their Recruitment by Host Genomes.听Biochemistry (Moscow),听88(11), 1754鈥1762.

Bachar-Wikstrom, E., Dhillon, B., Gill Dhillon, N.,听Abbo, L., Lind茅n, S. K., &听Wikstrom, J. D.听(2023). Mass Spectrometry Analysis of Shark Skin Proteins.听International Journal of Molecular Sciences,听24(23), Article 23.

Fiebig, A., Schnizlein, M. K., Pena-Rivera, S., Trigodet, F., Dubey, A. A., Hennessy, M. K., Basu, A., Pott, S., Dalal, S., Rubin, D.,听Sogin, M. L., Eren, A. M., Chang, E. B., & Crosson, S. (2023). Bile acid fitness determinants of a听Bacteroides fragilis听isolate from a human pouchitis patient.听mBio, e02830-23.

Ahkami, A. H., Qafoku, O., Roose, T., Mou, Q., Lu, Y.,听Cardon, Z. G., Wu, Y., Chou, C., Fisher, J. B., Varga, T., Handakumbura, P., Aufrecht, J. A., Bhattacharjee, A., & Moran, J. J. (2024). Emerging sensing, imaging, and computational technologies to scale nano-to macroscale rhizosphere dynamics 鈥 Review and research perspectives.听Soil Biology and Biochemistry,听189, 109253.

Fisher, G.,听Roman-Vendrell, C.,听Brady, E., &听Morgan, J.听(2023). 獗-synuclein alters the morphology of synaptic mitochondria in giant axons of sea lamprey.听IBRO Neuroscience Reports,听15, s560.

Rees, J. M.,听Palmer, M. A., &听Gillis, J. A.听(2023). Fgf signalling is required for gill slit formation in the skate,听Leucoraja erinacea.听Developmental Biology.

Arkhipova, I. R., Burns, K. H., Chiappinelli, K. B., Chuong, E. B., Goubert, C., Guarn茅, A., Larracuente, A. M., Lee, E. A., & Levin, H. L. (2023). Meeting report: Transposable elements at the crossroads of evolution, health and disease 2023.听Mobile DNA,听14.

Jimenez-Guri, E., Murano, C.,听Paganos, P., & Arnone, M. I. (2023). PVC pellet leachates affect adult immune system and embryonic development but not reproductive capacity in the sea urchin听Paracentrotus lividus.听Marine Pollution Bulletin.

Wallace, J. N.,听Crockford, Z. C.,听Rom谩n-Vendrell, C.,听Brady, E. B.,听Hoffmann, C.,听Vargas, K. J., Potcoava, M.,听Wegman, M. E., Alford, S. T.,听Milovanovic, D., &听Morgan, J. R.听(2023). Excess Phosphoserine-129 伪-Synuclein Induces Synaptic Vesicle Trafficking and Declustering Defects at a Vertebrate Synapse.听Molecular Biology of the Cell, mbc.E23-07-0269.

Beca-Carretero, P., Winters, G.,听Teichberg, M., Procaccini, G., Schneekloth, F., Zambrano, R. H., Chiquillo, K., & Reuters, H. (2024). Climate change and the presence of invasive species will threaten the persistence of the Mediterranean seagrass community.听Science of The Total Environment,听910, 168675.

Haviland, K. A.,听Hayn, M., &听Howarth, R. W.听(2023). Lab-based multispectral photography for approximating chlorophyll content in听Zostera marina.听Limnology and Oceanography: Methods.

Hehenberger, E., Guo, J., Wilken, S., Hoadley, K., Sudek, L., Poirier, C., Dannebaum, R., Susko, E., &听Worden, A. Z.听(2023). Phosphate limitation responses in marine green algae are linked to reprogramming of the tRNA epitranscriptome and codon usage bias.听Molecular Biology and Evolution, msad251.

Zheng, J., Mallon, J.,听Lammers, A., Rados, T.,听Litschel, T., Moody, E. R. R., Ramirez-Diaz, D. A., Schmid, A., Williams, T. A., Bisson-Filho, A. W., & Garner, E. (2023). Salactin, a dynamically unstable actin homolog in Haloarchaea.听mBio, e02272-23.听听*ARTC*

Thayer, R., &听Patel, N.听(2023). A meta-analysis of butterfly structural colors: Their color range, distribution and biological production.听Journal of Experimental Biology,听226(21).

Wei, H., Xu, X., Savoie, A., Schattle, E., Hardison, A., Erdner, D., &听McClelland, J.听(2023). Seasonal and nutrient controls on phytoplankton in the Aransas River tidal freshwater zone, Texas, USA.听Hydrobiologia.

Zammit, M., Kao, C.-M., Zhang, H., Tsai, H.-M., Holderman, N., Mitchell, S., Tanios, E., Bhuiyan, M., Freifelder, R., Kucharski, A.,听Green, W., Mukherjee, J., & Chen, C.-T. (2023). Evaluation of an Image-Derived Input Function for Kinetic Modeling of Nicotinic Acetylcholine Receptor-Binding PET Ligands in Mice.听International Journal of Molecular Sciences,听24(21), 15510.

Albertin, C. B., & Katz, P. S. (2023). Evolution of cephalopod nervous systems.听Current Biology,听33(20), R1087鈥揜1091.

Marino, R., Hayn, M.,听Howarth, R. W.,听Giblin, A. E., McGlathery, K. J., & Berg, P. (2023). Nitrogen fixation associated with epiphytes on the seagrass听Zostera marina听in a temperate lagoon with moderate to high nitrogen loads.听Biogeochemistry.

P茅rez Castro, S.,听Peredo, E., Mason, O., Vineis, J., Bowen, J., Mortazavi, B.,听Ganesh, A.,听Ruff, S.,听Paul, B.,听Giblin, A., &听Cardon, Z.听(2023). Diversity at single nucleotide to pangenome scales among sulfur cycling bacteria in salt marshes.听Applied and Environmental Microbiology, e0098823.

Bowen, J. L., Spivak, A. C., Bernhard, A. E., Fulweiler, R. W., &听Giblin, A. E.听(2023). Salt marsh nitrogen cycling: Where land meets sea.听Trends in Microbiology.

Chancellor, S.,听Grasse, B.,听Sakmar, T., Scheel, D., Brown, J. S., & Santymire, R. M. (2023). Exploring the Effect of Age on the Reproductive and Stress Physiology of Octopus bimaculoides Using Dermal Hormones.听Animals,听13(19), 3115.

K枚nig, S., Schmidt, N., Bechberger, K.,听Morris, S., Priego, M., Zaky, H.,听Song, Y., Pielage, J., Brunholz, S.,听Brady, S. T., Kins, S., &听Morfini, G.听(2023). Axon-Autonomous Effects of the Amyloid Precursor Protein Intracellular Domain (AICD) on Kinase Signaling and Fast Axonal Transport.听Cells,听12(19).

Ruff, S., & Baker, B. (2023). Editorial: Rising stars in hydrothermal vents and cold seeps: 2021.听Frontiers in Microbiology,听14, 1297372.

Strauss, J., Deng, L., Gao, S., Toseland, A., Bachy, C., Zhang, C., Kirkham, A., Hopes, A., Utting, R., Joest, E. F., Tagliabue, A., L枚w, C.,听Worden, A. Z., Nagel, G., & Mock, T. (2023). Plastid-localized xanthorhodopsin increases diatom biomass and ecosystem productivity in iron-limited surface oceans.听Nature Microbiology.

Wu-Woods, N. J., Barlow, J. T., Trigodet, F., Shaw, D. G., Romano, A. E., Jabri, B.,听Eren, A. M., & Ismagilov, R. F. (2023). Microbial-enrichment method enables high-throughput metagenomic characterization from host-rich samples.听Nature Methods.

Cauret, C. M. S.,听Jordan, D. C., Kukoly, L. M.,听Burton, S. R., Anele, E. U., Kwiecien, J. M., Gansauge, M.-T., Senthillmohan, S., Greenbaum, E., Meyer, M.,听Horb, M. E., & Evans, B. J. (2023). Functional dissection and assembly of a small, newly evolved, W chromosome-specific genomic region of the African clawed frog听Xenopus laevis.听PLOS Genetics,听19(10), e1010990.

Chavez Ramirez, C., Khoo, M., Lopez G, M.,听Ferguson, S.,听Walker, S., &听Echeverri, K.听(2023). Comparison of Blastema Formation after Injury in Two Cephalopod Species.听microPublication Biology.

Galarza-Mu帽oz, G., Soto-Morales, S., Jiao, S., Holmgren, M., &听Rosenthal, J.听(2023). Molecular determinants for cold adaptation in an Antarctic Na+/K+-ATPase.听Proceedings of the National Academy of Sciences of the United States of America,听120(41), e2301207120.

LaFountain Jr, J. R., Seaman, C. E., Cohan, C. S., &听Oldenbourg, R.听(2023). Sliding of antiparallel microtubules drives bipolarization of monoastral spindles.听Cytoskeleton.

Zhang, Y.,听Ruff, S. E., Oskolkov, N., Tierney, B. T., Ryon, K., Danko, D., Mason, C. E., & Elhaik, E. (2023). The microbial biodiversity at the archeological site of Tel Megiddo (Israel).听Frontiers in Microbiology,听14.